PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi5g21250.3.p
Common NameBRADI_5g21250
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 217aa    MW: 22120.3 Da    PI: 10.2865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi5g21250.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-192070155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++aa++ ++g
  Bradi5g21250.3.p 20 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHYRG 70
                      689*******.**********8...2.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.69E-182080No hitNo description
PfamPF008471.1E-132070IPR001471AP2/ERF domain
PROSITE profilePS5103224.4342178IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-222179IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-312179IPR001471AP2/ERF domain
SMARTSM003802.4E-322184IPR001471AP2/ERF domain
PRINTSPR003671.5E-102233IPR001471AP2/ERF domain
PRINTSPR003671.5E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAPKNALPVA AAAADGGVEP RFRGVRKRPW GRYAAEIRDP ARKARVWLGT FDTAEAAARA  60
YDAAALHYRG PKAKTNFPVA AGFAHIQAPL PPPKALAVSP SSSTVESSSR DTPAAVAAPV  120
APPPALDLSL AMPAMVAAQP FLFLDPRVAV TVAVAAPALA PVPRRPAAAA AVNEKKKAVS  180
REEEQSDTGS SSSVVDASPA VGIGFDLNLP PPADLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-202279664ATERF1
3gcc_A2e-202279664ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580517.11e-146PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotO803406e-34ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A0Q3P6C51e-146A0A0Q3P6C5_BRADI; Uncharacterized protein
STRINGBRADI5G21250.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-22ERF domain protein 11